Caveolin-1 (CAV1) is a vital scaffold protein heterogeneously expressed in both healthy and malignant tissue. We focus on the role of CAV1 when overexpressed in T-cell leukemia. Previously, we have shown that CAV1 is involved in cell-to-cell communication, cellular proliferation, and immune synapse formation; however, the molecular mechanisms have not been elucidated. We hypothesize that the role of CAV1 in immune synapse formation contributes to immune regulation during leukemic progression, thereby warranting studies of the role of CAV1 in CD4(+) T-cells in relation to antigen-presenting cells. To address this need, we developed a computational model of a CD4(+) immune effector T-cell to mimic cellular dynamics and molecular signaling under healthy and immunocompromised conditions (i.e., leukemic conditions). Using the Cell Collective computational modeling software, the CD4(+) T-cell model was constructed and simulated under CAV1 (+/+), CAV1 (+/-), and CAV1 (-/-) conditions to produce a hypothetical immune response. This model allowed us to predict and examine the heterogeneous effects and mechanisms of CAV1 in silico. Experimental results indicate a signature of molecules involved in cellular proliferation, cell survival, and cytoskeletal rearrangement that were highly affected by CAV1 knock out. With this comprehensive model of a CD4(+) T-cell, we then validated in vivo protein expression levels. Based on this study, we modeled a CD4(+) T-cell, manipulated gene expression in immunocompromised versus competent settings, validated these manipulations in an in vivo murine model, and corroborated acute T-cell leukemia gene expression profiles in human beings. Moreover, we can model an immunocompetent versus an immunocompromised microenvironment to better understand how signaling is regulated in patients with leukemia. Helikar Tomas thelika@unmc.edu University of Nebraska - Lincoln 2013-12-05T20:19:58Z 2016-01-22T07:08:46Z 2016-01-13T21:26:05Z 2016-01-13T21:26:05Z

Interleukin 15<div><br/></div><div>Uniprot ID:&nbsp;<strong style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">P40933</strong></div>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

Interleukin 23<div><br/></div><div>Uniprot ID: alpha&nbsp;<strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">Q9NPF7</strong></div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">V-set domain containing T cell activation inhibitor 1</span><br/><br/><a href="http://www.uniprot.org/uniprot/Q5MD59">Q5MD59</a>

2016-01-13T21:26:05Z

<div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);">Interferon-beta</span></div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);"></span><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);"><br/></span></div>UniProt ID&nbsp;<strong style="color: rgb(79, 79, 79); line-height: 14.389204025268555px; font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P01574</strong>

2016-01-13T21:26:05Z

Uniprot ID: P12560

2016-01-13T21:26:05Z

Interleukin 12<div><span style="font-size: 10pt;"><br/></span></div><div><span style="font-size: 10pt;">UniProtID: P29459, P68220</span></div>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

Glycoprotein 130 (Interleukin 6 Signal Transducer)<div><br/><div><br/></div><div>Uniprot ID : P40189</div><div><br/></div></div>

2016-01-13T21:26:05Z

Interleukin 6<div><br/></div><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);">Uniprot ID&nbsp;</span><strong style="color: rgb(79, 79, 79); line-height: 14.389204025268555px; font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P05231</strong></div>

2016-01-13T21:26:05Z

<div>Interleukin 10 receptor beta</div><div><br/></div>Uniprot ID: Q08334

2016-01-13T21:26:05Z

Transforming Growth Factor Beta<div><br/></div><div>Uniprot ID:&nbsp;<strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P01137</strong></div>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

Interleukin 10<div><br/></div><div>Uniprot id&nbsp;<strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P22301</strong></div>

2016-01-13T21:26:05Z

Uniprot ID: 38484

2016-01-13T21:26:05Z

Interleukin 15 receptor alpha<div><br/></div><div>Uniprot ID: Q13261</div>

2016-01-13T21:26:05Z

Interleukin 27 Receptor Alpha<div><br/></div><div>Uniprot ID: Q8NEV9</div>

2016-01-13T21:26:05Z

Interleukin 21<div><br/></div><div>Uniprot ID:&nbsp;<strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">Q9HBE4</strong></div>

2016-01-13T21:26:05Z

Interleukin 2<div><br/></div><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);">Uniprot ID&nbsp;</span><strong style="color: rgb(79, 79, 79); line-height: 14.389204025268555px; font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P60568</strong></div>

2016-01-13T21:26:05Z

<div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);">External source of Interferon gamma</span></div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);"></span><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);"><br/></span></div>Uniprot ID&nbsp;<strong style="color: rgb(79, 79, 79); line-height: 14.389204025268555px; font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P01579</strong>

2016-01-13T21:26:05Z

Interleukin 6 receptor alpha<div><br/></div><div>Uniprot ID: P08887</div>

2016-01-13T21:26:05Z

Antigen Presenting Cell

2016-01-13T21:26:05Z

Interleukin 27<div><br/></div><div>Uniprot ID&nbsp;<strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">Q8NEV9,</strong><strong style="font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">Q14213</strong></div>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z 2016-01-13T21:26:05Z

null<br><br>null

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z 2016-01-13T21:26:05Z

Common Gamma Chain<div><br/></div><div>Interleukin 2 Receptor Gamma Chain</div><div><br/></div><div>Uniprot ID: P31785</div><div><br/></div>

2016-01-13T21:26:05Z

Interleukin 4<div><br/></div><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 14.389204025268555px; background-color: rgb(255, 255, 255);">Uniprot ID &nbsp;</span><strong style="color: rgb(79, 79, 79); line-height: 14.389204025268555px; font-family: sans-serif; font-size: 16px; background-color: rgb(255, 255, 255);">P05112</strong></div>

2016-01-13T21:26:05Z

<div>Formation of the interleukin 2 low&nbsp;<span style="font-size: 10pt;">affinity receptor complex with&nbsp;</span><span style="font-size: 10pt;">interleukin 2 receptor, beta, gamma,&nbsp;</span><span style="font-size: 10pt;">also response to interleukin 15</span></div><div><span style="font-size: 10pt;">UniProt Accession ID:&nbsp;</span><a href="http://www.uniprot.org/uniprot/P14784" style="font-size: small; text-decoration: none; font-family: sans-serif; background-color: rgb(255, 255, 255);">P14784</a></div>

2016-01-13T21:26:05Z

Interleukin 10 receptor alpha<div><br/></div><div>Uniprot ID: Q13651</div>

2016-01-13T21:26:05Z

<span style="font-family: sans-serif; background-color: rgb(255, 255, 255);">Janus kinase 3</span><div><span style="font-family: sans-serif; background-color: rgb(224, 235, 239);"><br/></span></div><div><a href="http://www.uniprot.org/uniprot/P52333" style="text-decoration: none; font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">P52333</a></div>

2016-01-13T21:26:05Z

<div>Transcription factor AP1</div><div><br/></div>Uniprot ID: P05412

2016-01-13T21:26:05Z

Beta Integrins<div><br/></div><div>Uniprot ID: Q16157</div>

2016-01-13T21:26:05Z

<div>H2.0-like homeobox protein</div><div><br/></div>Uniprot ID: Q14774

2016-01-13T21:26:05Z

Interleukin 4<div><br/></div><div>Uniprot ID: P05112</div>

2016-01-13T21:26:05Z

Wiskott-Alrdich Syndrome protein family member 2<div><br/></div><div>Uniprot ID: Q9Y6W5</div>

2016-01-13T21:26:05Z

Interleukin 2 Receptor Alpha<div><br/></div><div>Uniprot ID: P01589</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">RAS guanyl releasing protein 1 (calcium and DAG-regulated)<br/><br/></span><a href="http://www.uniprot.org/uniprot/O95267">O95267</a><br/>

2016-01-13T21:26:05Z

Globular Actin<div><br/></div><div>Uniprot ID: P63261</div>

2016-01-13T21:26:05Z

Interleukin 12 receptor beta chain 2<div><br/></div><div>Uniprot ID: Q99665</div>

2016-01-13T21:26:05Z

<font face="Arial, Verdana">Interleukin 2 Receptor</font><div><br/></div><div>Represents Interleukin 2 receptor in high activity level.&nbsp;</div><div><br/></div><div>Represents Interleukin 2 receptor alpha and beta<br/><div style="font-size: 10pt;"><br/></div><div><font face="Arial, Verdana" size="2">Uniprot ID: P01589</font><font size="2" face="sans-serif"><strong>&nbsp;,</strong>&nbsp;P14784</font></div></div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">suppressor of cytokine signaling 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/O15524">O15524</a><br/>

2016-01-13T21:26:05Z

Wiskott-Aldrich Syndrome Protein<div><br/></div><div>Uniprot ID: P42768</div>

2016-01-13T21:26:05Z

<div>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<p class="p1">Focal Adhesion Kinase phosphorylated on Tyrosine residues 576 and 577</p></div>Uniprot ID: Q05397

2016-01-13T21:26:05Z

<div><span style="font-family: sans-serif; background-color: rgb(255, 255, 255);">Rap guanine nucleotide exchange factor (GEF)-like 1</span></div><div><br/></div><a href="http://www.uniprot.org/uniprot/Q13905" style="text-decoration: none; font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Q13905</a>

2016-01-13T21:26:05Z

Interferon regulatory factor 1<div><br/></div><div>Uniprot ID: P10914</div>

2016-01-13T21:26:05Z

Tumor necrosis factor receptor-associated factor 6<div><br/></div><div>Uniprot ID: Q9Y4K3</div>

2016-01-13T21:26:05Z

<div>Myosin Light Chain<br/></div><div><br/></div><div>Uniprot ID: P14649</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">signal transducer and activator of transcription 3<br/></span><a href="http://www.uniprot.org/uniprot/P40763">P40763</a><br/>

2016-01-13T21:26:05Z

<table class="search_results_data_tbl" border="0" cellpadding="0" cellspacing="0"><tbody><tr id="STAT6 &amp; stat6" class="card_section_left_tr_even sectionFolding" height="27"><td style="" class="scol_symbol search_results_data_body_text highlightable">\r\n <br/></td>\r\n <td style="" class="scol_desc search_results_data_body_text highlightable">\r\n <span class="search_results_data_body_gc">\r\n signal transducer and activator of transcription 6</span></td></tr></tbody></table><a href="http://www.uniprot.org/uniprot/P42226">P42226</a>

2016-01-13T21:26:05Z

B cell lymphoma and&nbsp;<span style="font-size: 10pt;">Mucosa associated lymphoid tissue lymphoma transloaction protein 1</span><div><br/></div><div>Uniprot ID: O95999,&nbsp;<span style="font-size: 10pt;">Q9UDY8</span></div>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n

2016-01-13T21:26:05Z

<div>Adaptor molecule CRK</div><div><br/></div>Uniprot ID: P46108

2016-01-13T21:26:05Z

Interleukin 9 receptor<div><br/></div><div>Uniprot ID: Q01113</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">signal transducer and activator of transcription 4<br/></span><a href="http://www.uniprot.org/uniprot/Q14765">Q14765</a><br/>

2016-01-13T21:26:05Z

<div>Cathelicidin antimicrobial peptide</div><div><br/></div>Uniprot ID: P49913

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">Rho guanine nucleotide exchange factor (GEF) 12</span></div><div><br/></div><div>Uniprot ID: Q15085</div>

2016-01-13T21:26:05Z

FYN Oncogene Related To SRC, FGR,<br/><br/>Uniprot ID: P06241

2016-01-13T21:26:05Z

<span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Retinoid-related orphan receptor-gamma-theta</span><div><span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);"><br/></span></div><div><span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Uniprot ID: P51449</span></div>

2016-01-13T21:26:05Z

<div>Cell division control protein 42 homolog</div><div><br/></div>Uniprot ID: P60953

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">BAI1-associated protein 2\r\n </span><br/><br/><a href="http://www.uniprot.org/uniprot/Q9UQB8" class="link12HoverRed" target="_blank">Q9UQB8</a>

2016-01-13T21:26:05Z

<span style="font-size: 12px;">Non-receptor tyrosine-protein kinase TYK2</span><div><span style="font-size: 12px;"><br/></span></div><div><span style="font-size: 12px;">Uniprot ID: P29597</span></div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">Rho-associated, coiled-coil containing protein kinase 1<br/></span><a href="http://www.uniprot.org/uniprot/Q13464">Q13464</a><br/>

2016-01-13T21:26:05Z

Phospholipase C, beta<br/><br/><a href="http://www.uniprot.org/uniprot/Q01970">Q01970</a>

2016-01-13T21:26:05Z

<table class="ui-datagrid-data"><tbody><tr class="ui-datagrid-row"><td class="ui-datagrid-column"><h3><span style="font-size: 12px;"><em>Interleukin 22</em></span></h3><div><span style="font-size: 12px;"><strong><em><br/></em></strong></span></div><div><span style="font-size: 12px;"><strong><em>Uniprot ID: Q9GZX6</em></strong></span></div></td></tr></tbody></table><br/>

2016-01-13T21:26:05Z

<div>Actin related protein 2 and 3</div><div><br/></div>Uniprot ID: P61160, P61158

2016-01-13T21:26:05Z

<br/><table class="search_results_data_tbl" border="0" cellpadding="0" cellspacing="0"><tbody><tr id="RALA &amp; ras" class="card_section_left_tr_even sectionFolding" height="27"><td style="" class="scol_symbol search_results_data_body_text highlightable">\r\n <br/></td>\r\n <td style="" class="scol_desc search_results_data_body_text highlightable">\r\n <span class="search_results_data_body_gc">\r\n v-ral simian leukemia viral oncogene homolog A<br/><br/>Uniprot ID:&nbsp;Q7KZ06,&nbsp;Q9UM97</span></td></tr></tbody></table><br/>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/P28482">P28482</a><br/>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein\r\n </span><br/><br/><a href="http://www.uniprot.org/uniprot/Q7Z5R6">Q7Z5R6</a>

2016-01-13T21:26:05Z

Follicular Actin<div><br/></div><div>Uniprot ID: P63261</div>

2016-01-13T21:26:05Z

This node denotes a proliferating cell

2016-01-13T21:26:05Z

Calcineurin<div><br/></div><div>Uniprot ID:&nbsp;</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">v-raf-1 murine leukemia viral oncogene homolog 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/P04049">P04049</a><br/>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">LIM domain kinase 1</span></div><div><br/></div><div>Uniprot ID: P53667</div>

2016-01-13T21:26:05Z

<div>Interleukin 4 receptor alpha</div><div><br/></div>Uniprot ID: P24394

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

<div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);">Interleukin 4 Receptor</div><div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);"><br/></div><div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);">Represents higher activity of Interleukin 4 receptor.&nbsp;</div><div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);"><br/></div><div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);">Interleukin 4 receptor is represented by Interleukin 4 receptor alpha, Glycoprotein 130, and Interleukin 2 Receptor gamma chain.&nbsp;</div><div style="font-size: 12px; color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255);"><br/></div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 14.390625px; background-color: rgb(255, 255, 255);">UNIPROT ID: P24394,&nbsp;</span><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255); font-size: 10pt;">P31785,&nbsp;</span><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; line-height: 14.390625px; background-color: rgb(255, 255, 255); font-size: 10pt;">P40189</span>

2016-01-13T21:26:05Z

<div>Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1</div><div><br/></div>Uniprot ID: H2Q1P5

2016-01-13T21:26:05Z

Interleukin 21<div><br/></div><div>Uniprot ID: Q9HBE4</div>

2016-01-13T21:26:05Z

Interleukin 18 Receptor 1<div><br/></div><div>Uniprot ID: Q13478</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">suppressor of cytokine signaling 3<br/><br/></span><a href="http://www.uniprot.org/uniprot/O14543">O14543</a><br/>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">linker for activation of T cells</span></div><div><br/></div><div>Uniprot ID: O43561</div>

2016-01-13T21:26:05Z

<span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(255, 255, 255);"><font size="2">&nbsp;Mothers against decapentaplegic homolog 3</font></span><div><span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);"><font size="2"><br/></font></span></div><div><span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);"><font size="2">Uniprot ID: P84022</font></span></div>

2016-01-13T21:26:05Z

<div>T cell surface glycoprotein CD3 gamma, delta, epsilon, and zeta</div><div><br/></div>Uniprot ID: P09693, P04234, P07766, P20963

2016-01-13T21:26:05Z

null<br><br>Mitogen activated protein kinase 14&nbsp;<div><br/></div><div>Uniprot ID: Q16539</div>

2016-01-13T21:26:05Z

Calcium Ion

2016-01-13T21:26:05Z

Interleukin 10<div><br/></div><div>Uniprot ID: P22301</div>

2016-01-13T21:26:05Z

<div>G protein coupled receptor 12/13<br/></div><div><br/></div><div>Uniprot ID: P47775</div>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">nitric oxide synthase 2, inducible</span></div><div><br/></div><div>Uniprot ID: P35228</div>

2016-01-13T21:26:05Z

Transforming Growth Factor Beta 1<div><br/></div><div>Uniprot ID: P01137</div>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">p21 protein (Cdc42/Rac)-activated kinase 1</span></div><div><br/></div><div>Uniprot ID: Q13153</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">Rap guanine nucleotide exchange factor (GEF) 1\r\n </span><br/><br/><a href="http://www.uniprot.org/uniprot/Q13905">Q13905</a>

2016-01-13T21:26:05Z

T Cell Receptor<br/><a href="http://www.uniprot.org/uniprot/A2NZL4">A2NZL4</a><br/><a href="http://www.uniprot.org/uniprot/A2NZL7">A2NZL7</a><br/>

2016-01-13T21:26:05Z

<div>Interleukin 4 Receptor</div><div><br/></div><div>Interleukin 4 receptor is represented by Interleukin 4 receptor alpha, Glycoprotein 130, and Interleukin 2 Receptor gamma chain.&nbsp;</div><div><br/></div>UNIPROT ID: P24394,&nbsp;<span style="font-size: 10pt;">P31785,&nbsp;</span><span style="font-size: 10pt;">P40189</span>

2016-01-13T21:26:05Z

<span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);">nuclear factor of activated T-cells&nbsp;</span><span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);">calcineurin-dependent 1-4</span><div><span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);"><br/></span></div><div><span style="font-family: Tahoma, Verdana, Arial, Helvetica, 'Bitstream Vera Sans', sans-serif; line-height: 16.453125px; background-color: rgb(241, 244, 247);">Uniprot ID: Q95644, Q13469, Q12968, Q14934</span></div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">son of sevenless homolog 1</span><div><br/></div><div>Uniprot ID: Q07889</div>

2016-01-13T21:26:05Z

Adenylate Cyclase&nbsp;<div><br/></div><div>Uniprot ID: Q08828</div>

2016-01-13T21:26:05Z

Transforming Growth Factor Beta Receptor<div><br/></div><div>Uniprot ID: Q64729</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase kinase 7\r\n </span><br/><br/><a href="http://www.uniprot.org/uniprot/O14733">O14733</a>

2016-01-13T21:26:05Z

Interleukin 2&nbsp;<div><br/></div><div>Uniprot ID: P60568</div>

2016-01-13T21:26:05Z

<div>Inducible T cell costimulator</div><div><br/></div>Uniprot ID: Q9Y6W8

2016-01-13T21:26:05Z

Runt related transcription factor 3<div><br/></div><div>Uniprot ID: Q13761</div>

2016-01-13T21:26:05Z

<div>Growth arrest and DNA damage-inducible protein gamma</div><div><br/></div>Uniprot ID: O95257

2016-01-13T21:26:05Z

Interleukin 22 Receptor&nbsp;<div><br/></div><div>Uniprot ID: Q8N6P7, Q969J5</div>

2016-01-13T21:26:05Z

<span class="RECOMMENDED"><span class="FULL">Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase</span></span><br/><br/><a href="http://www.uniprot.org/uniprot/P60484">P60484</a>

2016-01-13T21:26:05Z

<table class="search_results_data_tbl" border="0" cellpadding="0" cellspacing="0"><tbody><tr id="PRKACA &amp; pka" class="card_section_left_tr_odd sectionFolding" height="27"><td style="" class="scol_symbol search_results_data_body_text highlightable">\r\n <br/></td>\r\n <td style="" class="scol_desc search_results_data_body_text highlightable">\r\n <span class="search_results_data_body_gc">\r\n protein kinase, cAMP-dependent, catalytic, alpha\r\n</span></td></tr></tbody></table><br/><a href="http://www.uniprot.org/uniprot/P17612">P17612</a><br/>

2016-01-13T21:26:05Z

<div>Trans-acting T-cell-specific transcription factor GATA3</div><br/>Uniprot ID: P23771

2016-01-13T21:26:05Z

Interleukin 23<div><br/></div><div>Uniprot ID: Q5VWK5</div>

2016-01-13T21:26:05Z

Interleukin 27 Receptor<div><br/></div><div>Represents Interleukin 27 receptor alpha and glycoprotein 130.</div><div><br/></div><div>Uniprot ID:&nbsp;<span style="font-size: 10pt;">P40189,&nbsp;</span><span style="font-size: 10pt;">Q8NEV9</span></div>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n

2016-01-13T21:26:05Z

Interleukin 21 Receptor<div><br/></div><div>Uniprot ID: Q9HBE5</div>

2016-01-13T21:26:05Z

<span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Inositol 1,4,5-trisphosphate receptor type 1</span><div><span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);"><br/></span></div><div><span style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Uniprot ID: Q14643</span></div>

2016-01-13T21:26:05Z

Nuclear factor kappa beta<div><br/></div><div>Uniprot ID: P19838</div>

2016-01-13T21:26:05Z

<div>Dystroglycan precursor</div><div><br/></div>Uniprot ID: Q14118

2016-01-13T21:26:05Z

Interferon gamma receptor<div><br/></div><div>Uniprot ID: P15260, P38484</div><div><br/></div><div><br/></div>

2016-01-13T21:26:05Z

<div>Growth Factor receptor-bound protein 2</div><div><br/></div>Uniprot ID: Q60631

2016-01-13T21:26:05Z

<div>dipeptidyl peptidase 4</div><div><br/></div>Uniprot ID: P27487

2016-01-13T21:26:05Z

Interleukin 23 Receptor<div><br/></div><div>Uniprot ID: Q5VWK5</div>

2016-01-13T21:26:05Z

Tyrosine Protein Kinase ZAP70<div><br/></div><div>Uniprot ID: P43403</div>

2016-01-13T21:26:05Z

<font face="Arial, Verdana" size="2">Interleukin 2 Receptor</font><div style="font-family: Arial, Verdana; font-size: 10pt; font-weight: normal;"><br/></div><div><font face="Arial, Verdana" size="2">Uniprot ID: P01589</font><font size="2" face="sans-serif"><strong>&nbsp;,</strong> P14784</font></div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">signal transducer and activator of transcription 1<br/></span><a href="http://www.uniprot.org/uniprot/P42224">P42224</a><br/>

2016-01-13T21:26:05Z

Interferon regulatory factor 4<div><br/></div><div>Uniprot ID: Q15306</div>

2016-01-13T21:26:05Z

<table class="search_results_data_tbl" border="0" cellpadding="0" cellspacing="0"><tbody><tr id="SIT1 &amp; shp2" class="card_section_left_tr_even sectionFolding" height="27"><td style="" class="scol_symbol search_results_data_body_text highlightable">\r\n <br/></td>\r\n <td style="" class="scol_desc search_results_data_body_text highlightable">\r\n <span class="search_results_data_body_gc">\r\n signaling threshold regulating transmembrane adaptor <br/></span></td></tr></tbody></table><br/><br/><a href="http://www.uniprot.org/uniprot/Q9Y3P8">Q9Y3P8</a>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">SHC (Src homology 2 domain containing) transforming protein 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/P29353">P29353</a><br/>

2016-01-13T21:26:05Z

<div>Uniprot ID: Q13651, Q08334</div><div><br/></div>

2016-01-13T21:26:05Z

<strong>Phosphoinositide 3-kinase<br/><br/><br/></strong><a href="http://www.uniprot.org/uniprot/Q99570">Q99570</a><br/>

2016-01-13T21:26:05Z

Proto oncogene Vav<div><br/></div><div>Uniprot ID: P15498</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">phospholipase C, <em>gamma</em> 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/P19174">P19174</a><br/>

2016-01-13T21:26:05Z

<table class="ui-datagrid-data"><tbody><tr class="ui-datagrid-row"><td class="ui-datagrid-column">Tyrosine-protein kinase JAK1<br/><br/>Uniprot ID: P23458</td></tr></tbody></table>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase kinase 6<br/><br/></span><a href="http://www.uniprot.org/uniprot/P52564">P52564</a><br/>

2016-01-13T21:26:05Z

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 17.99715805053711px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">TBET is also known as T-box 21. It is the transcription factor responsible for CD4+ T helper 1 differentiation. [1][2][3]</span><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 17.99715805053711px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);"><br/></span></div><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 11.818181991577148px; line-height: 17.99715805053711px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">Uniprot accession ID&nbsp;</span><strong style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Q9UL17- Human</strong></div><div><strong style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Uniprot accession ID&nbsp;</strong><strong style="font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Q9JKD8</strong></div>

2016-01-13T21:26:05Z

Mitogen activated protein kinase 3<div><br/></div><div>Uniprot ID: P27361</div>

2016-01-13T21:26:05Z

Tyrosine protein kinase JAK2<div><br/></div><div>Uniprot ID: O60674</div>

2016-01-13T21:26:05Z

<div>NF-kabba-B inhibitor alpha, beta</div><div><br/></div>Uniprot ID: P25963, Q15653

2016-01-13T21:26:05Z

Mitogen activated protein kinase kinase kinase 4<div><br/></div><div>Uniprot ID: Q9Y6R4</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase 3<br/><br/></span><a href="http://www.uniprot.org/uniprot/P27361">P27361</a><br/>

2016-01-13T21:26:05Z

B cell lymphoma, Caspase recruitment domain-containing protein 11, Mucosa associated lymphoid tissue lymphoma transloaction protein 1<div><br/></div><div><br/></div><div>Uniprot ID: O95999, Q9BXL7, Q9UDY8</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">ras homolog family member A<br/><br/></span><a href="http://www.uniprot.org/uniprot/P61586">P61586</a><br/>

2016-01-13T21:26:05Z

<div>GRB2-associated binding protein-2</div><div><br/></div>Uniprot ID: Q9UQC2

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">signal transducer and activator of transcription 5A<br/></span><a href="http://www.uniprot.org/uniprot/P42229">P42229</a><br/>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein <em>Rac1</em>)<br/><br/></span><a href="http://www.uniprot.org/uniprot/P63000">P63000</a><br/>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc"><em>NCK</em> adaptor protein 1\r\n </span></div><div><br/></div><div>Uniprot ID: P16333</div>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">lymphocyte-specific protein tyrosine kinase</span></div><div><br/></div><div>Uniprot ID: P06239</div>

2016-01-13T21:26:05Z

Interferon Gamma<div><br/></div><div>Uniprot ID: P01579&nbsp;</div><div><br/></div><div><br/></div>

2016-01-13T21:26:05Z

<div>Serine/Threonine -protein kinase B-raf</div><div><br/></div>Uniprot ID: P15056

2016-01-13T21:26:05Z

<div>Glycogen synthase kinase 3 beta</div><div><br/></div>Uniprot ID: P49841

2016-01-13T21:26:05Z

<div>Cofilin 1</div><div><br/></div>Uniprot ID: P23528, Q9Y281

2016-01-13T21:26:05Z

Profilin<br/><br/><a href="http://www.uniprot.org/uniprot/P07737">P07737</a>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">v-<em>src</em> avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog<br/></span><a href="http://www.uniprot.org/uniprot/P12931">P12931</a><br/>

2016-01-13T21:26:05Z

3-phosphoinositide-dependent protein kinase 1<br/><br/><a href="http://www.uniprot.org/uniprot/O15530">O15530</a>

2016-01-13T21:26:05Z

<div>Nf-Kb inducing kinase</div><div><br/></div><a href="http://www.uniprot.org/uniprot/Q8IX17" style="text-decoration: none; font-family: sans-serif; font-size: small; background-color: rgb(255, 255, 255);">Q8IX17</a>

2016-01-13T21:26:05Z

<span class="st">Crk-associated substrate<br/><br/></span><span class="st"><a href="http://www.uniprot.org/uniprot/P56945">P56945</a><br/></span>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase kinase kinase 7</span><br/><a href="http://www.uniprot.org/uniprot/O43318">O43318</a>

2016-01-13T21:26:05Z

<div>RAC-alpha serine/threonine-protein kinase</div><div><br/></div>Uniprot ID: P31749

2016-01-13T21:26:05Z

<div>Interleukin 12 receptor subunit beta 1</div><div><br/></div>Uniprot ID: P42701

2016-01-13T21:26:05Z

<div>Growth arrest and DNA damage inducible protein beta</div><div><br/></div>Uniprot ID: O75293

2016-01-13T21:26:05Z

<div>Caspase recruitment domain-containing protein 11</div><div><br/></div>Uniprot ID: Q9BXL7

2016-01-13T21:26:05Z

T Cell specific surface glycoprotein<div><br/></div><div>Uniprot ID&nbsp;P10747</div>

2016-01-13T21:26:05Z

<div>ETS translocation variant 5</div><div><br/></div>Uniprot ID: P41161

2016-01-13T21:26:05Z

<div>Focal adhesion kinase 1</div><div><br/></div>Uniprot ID: Q05397

2016-01-13T21:26:05Z

Protein Kinase C<br/><br/><a href="http://www.uniprot.org/uniprot/Q05513">Q05513</a><br/><a href="http://www.uniprot.org/uniprot/P17252">P17252</a><br/><a href="http://www.uniprot.org/uniprot/P05771">P05771</a><br/>

2016-01-13T21:26:05Z

Interleukin 17<div><br/></div><div>Uniprot ID: Q16552</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">interleukin-1 receptor-associated kinase 1<br/><br/></span><a href="http://www.uniprot.org/uniprot/P51617">P51617</a><br/>

2016-01-13T21:26:05Z

<table class="search_results_data_tbl" border="0" cellpadding="0" cellspacing="0"><tbody><tr id="MAPK4 &amp; MAPK4" class="card_section_left_tr_even sectionFolding" height="27"><td style="" class="scol_symbol search_results_data_body_text highlightable">\r\n <br/></td>\r\n <td style="" class="scol_desc search_results_data_body_text highlightable">\r\n <span class="search_results_data_body_gc">\r\n mitogen-activated protein kinase 4\r\n </span></td></tr></tbody></table><br/><a href="http://www.uniprot.org/uniprot/P31152">P31152</a><br/>

2016-01-13T21:26:05Z

Interferon beta receptor<div><br/></div><div>Uniprot ID P17181&nbsp;</div>

2016-01-13T21:26:05Z
2016-01-13T21:26:05Z

G protein coupled receptor Q<br/><br/><a href="http://www.uniprot.org/uniprot/P50148">P50148</a><br/>

2016-01-13T21:26:05Z

<div>T cell surface glycoprotein CD4</div><div><br/></div>Uniprot ID: P01730

2016-01-13T21:26:05Z

Spleen Tyrosine Kinase<br/><a href="http://www.uniprot.org/uniprot/P43405">P43405</a>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">IL2-inducible T-cell kinase</span></div><div>Uniprot ID: Q08881</div>

2016-01-13T21:26:05Z

Wiskott-Aldrich syndrome Protein<div><br/></div><div>Uniprot ID: P42768</div>

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc">mitogen-activated protein kinase 8 interacting protein 3</span><br/><br/><a href="http://www.uniprot.org/uniprot/Q9UPT6">Q9UPT6</a>

2016-01-13T21:26:05Z

<div>Class E basic helix-loop-helix protein 41</div><div><br/></div>Uniprot ID: Q9C0J9

2016-01-13T21:26:05Z

Interleukin 6 receptor<div><br/></div><div>Represents Interleukin 6 receptor alpha and glycoprotein 130.&nbsp;</div><div><br/></div><div><span style="font-size: 10pt;">Uniprot ID: P08887,</span><span style="font-size: 10pt;">P40189</span></div>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n

2016-01-13T21:26:05Z

Interleukin 4 receptor alpha<div><br/></div><div>Represents Interleukin 4 receptor with high activity</div><div><br/></div><div>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<p class="p1">Uniprot ID: P24394</p></div>

2016-01-13T21:26:05Z

<div><span class="search_results_data_body_gc">lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)\r\n</span></div><div><br/></div><div>Uniprot ID: Q13094</div>

2016-01-13T21:26:05Z

<div>Inhibitor of nuclear factor kappa-b kinase subunit alpha, beta</div><div><br/></div>Uniprot ID: O15111, O14920

2016-01-13T21:26:05Z

<div>Grb2-related adaptor protein 2</div><div><br/></div>Uniprot ID: O75791

2016-01-13T21:26:05Z

<div>Forhead box protein p3</div><div><br/></div>Uniprot ID: Q9BZS1

2016-01-13T21:26:05Z

<div>Zinc finger like protein GFI1</div><div><br/></div>Uniprot ID: Q99684

2016-01-13T21:26:05Z

<div>Cyclic AMP-dependent transcription factor</div><div><br/></div>Uniprot ID: P15336

2016-01-13T21:26:05Z

<div>Caveolin 1</div><div><br/></div>Uniprot ID: Q03135

2016-01-13T21:26:05Z

<div>Interleukin 15 receptor</div><div><br/></div>Uniprot ID: Q13261

2016-01-13T21:26:05Z

<span class="search_results_data_body_gc"><em>RAP1</em> GTPase activating protein<br/><br/></span><a href="http://www.uniprot.org/uniprot/P47736">P47736</a><br/>

2016-01-13T21:26:05Z

Paxillin<br/><br/><a href="http://www.uniprot.org/uniprot/P49023">P49023</a>

2016-01-13T21:26:05Z

IL2R activates JAK3.<br/>

JAK3 couples to IL2R and is activated [1-3].<br/>

S_102 1

Erk leads to AP-1 transcription. [2] JNK phosphorylates AP1. [1-3]

ERKs phosphorylate TCF/Elk-1 and thereby induce c-Fos synthesis, leading to AP-1 transcription [1,2,4].<br/>

JNK-mediated phosphorylation of ATF2 and AP1(c-Jun) bound to the AP1(c-jun) promoter stimulates their transcriptional activities leading to AP1(c-jun) induction. The newly synthesized c-Fos and AP1(c-Jun) proteins combine to form stable AP-1 heterodimers. A further increase in\r\n AP-1 activity is brought about by the JNKs, which phosphorylate AP1(c-Jun) [1,2,4].<br/>

STAT4 binds AP-1 to promote higher levels of AP-1 binding to the IFNG promoter. [1,2,4]

S_172 1 S_27 1 S_116 1

Integrins are activated by ligands in the extracelluar matrix. TCR induced integrin clustering independtly activates beta integrins.<br/>

Beta integrins bind soluble and insoluble ligands from the extracellular matrix [1,3,4].<br/>

Stimulation of the CD3–T-cell receptor<sup> </sup>(TCR) complex results in rapid increases in ß1&nbsp;integrin-mediated<sup> </sup>adhesion [2,5,6].<br/>

S_73 1 S_144 1

TBET induces HLX expression. [1-3]

TBET induces expression of HLX and interact with it to promote IFNG signaling. [1-3]

S_115 1

GATA3 is the TH2 transcription factor responsible for the cell's production of Interleukin 4. GATA3 cooperates with NFAT and proliferation to promote Interleukin 4 production. IRF4 promotes Interleukin 4 production by binding of it's promoter. FOXP3 works to inhibit Interleukin 4 through the silencing of NFAT. IRF1 inhibits interleukin 4 by binding three promoter sites and blocking the transcription of interleukin 4. TBET alone cannot inhibit Interleukin 4. TBET requires co expression of RUNX3 for maximum interferon gamma production and maximum interleukin 4 silencing. [1-8]

IRF1 inhibits Interleukin 4 production by binding to three distinct promoter sites for Interleukin 4.&nbsp;<span style="font-size: 10pt;">[1][6]</span>

Proliferation is denoted as a time point in the model when the cell has the correct parameters to proliferate. [1] It work with transcription factors GATA3 and NFAT to promote the expansion of a differentiated T cell, in this case, a TH2 cell.&nbsp;<span style="font-size: 10pt;">[1][2][5]</span>

RUNX3 cooperates with transcription factor TBET to bind to the Interferon Gamma promoter and the Interleukin 4 silencer.&nbsp;<span style="font-size: 10pt;">[1][2][5]</span>

TBET cooperates with transcription factor RUNX3 to bind the Interferon Gamma promoter and the Interleukin 4 silencer to inhibit Interleukin 4 production.&nbsp;<span style="font-size: 10pt;">[1][2][5]</span>

<div>The transcription factor NFAT works with transcription factor GATA3 and proliferation. NFAT and proliferation are needed for expansion of differentiated CD4 T helper cells.&nbsp;<span style="font-size: 10pt;">[1][2][4]</span></div>

<div>IRF4 is responsible for the production of Interleukin 2,4, and IFNG. It transactivates the promoter for Interleukin 4.&nbsp;<span style="font-size: 10pt;">[7][8]</span></div>

<div>GATA3 induces expression of Interleukin 4 through epigenetic modification. [1][3] GATA3 requires transcription factor NFAT as well as proliferation to induce Interleukin 4. [1][2]&nbsp;</div>

<div>FOXP3 blocks the expression of transcription factor, NFAT, thus inhibiting Interleukin 4 expression.&nbsp;<span style="font-size: 10pt;">[1][4]</span></div>

S_89 1 S_46 1 S_75 1 S_18 1 S_115 1 S_83 1 S_181 1 S_104 1

IRSp53 transmits a signal from Rac1 to WAVE2 through&nbsp; the formation of a ternaryRac-IRSp53-WAVE2. Activation of WAVE-2 is dependent on both rac1 and IRSp53 being active.<br/>

The proline-rich region of WAVE-2 binds to C-terminal end of IRSp53 [1-3].<br/>

<font face="Arial" size="2"><font size="2">A</font>ctivated Rac binds to the Rac-binding domain (RCB) in the N-terminus of IRSp53. The C-terminal SH3 domain of</font><font face="Arial" size="2">IRSp53 binds to WAVE to form a trimolecular complex [1-3].</font><br/>

S_35 1 S_128 1

NFAT is required at all times and needs only one of the following to activate IL2RA, FOXP3, NFKB, SMAD3,STAT5. [1-3]

SMAD3 cooperates with NFAT to activate IL2RA. [1-3]

STAT5 cooperates with NFAT to activate IL2RA. [1-3]

NFKB can cooperate with NFAT to promote IL2RA activity. [1-3]

NFAT is required and can cooperate with FOXP3, NFKB, SMAD3, or STAT5 to activate IL2RA. [1-3]

FOXP3 activates IL2RA to promote a higher level of interleukin 2 signaling. [1-3]

S_181 1 S_75 1 S_62 1 S_75 1 S_125 1 S_75 1 S_95 1 S_75 1

RASgrp is activated upon DAG binding.<br/>

Once localized to the membrane, via ZAP-70 and Galpha i, DAG binds to the DAG binding domain of RasGRP, thereby activating it [1-4].<br/>

S_96 1

Profilin catalyzes to formation of ATP bound g-actin, which is the active form of g-actin.<br/>

Profilin catalyzes the exchange of ADP for ATP on g-actin, refilling the pool of ATP-actin monomers bound to profilin [1-4].

S_143 1

IL12RB2 is a subchain of the interleukin 12 receptor [1]. STAT6 is responsible for inhibiting the interleukin 12 pathway by inhibition of IL12RB2. [2]

STAT6 down-regulates the gene for IL12RB2. [1-3]

IL12_e binds to IL12RB2 to start the activation of the Interleukin 12 pathway. [1-3]

S_57 1

CGC and IL2RB are needed for normal affinity responses. This node indicates the high affinity response, so IL2RA is required as well. IL2 or IL2_e can be used to activate IL2R_high. [1-3]

IL2RA is a subunit of IL2R and is required for IL2 signaling. IL2RA is needed for the high affinity response. [1-3]

Internal source of interleukin 2 that binds IL2R. [1-3]

IL2RB is a subunit of IL2R and is required for IL2 signaling. [1-3]

External source of interleukin 2 that binds IL2R. [1-3]

CGC is the common gamma chain that is a subunit of the IL2R. Its activity is required for IL2R signaling. [1-3]

S_81 1 S_8 1 S_180 1 S_168 1 S_135 1 S_8 1 S_180 1 S_168 1

STAT3 and STAT6 activate SOCS1 [1-5]

STAT6 binds to the promoter of SOCS1 and thus activating it. [1-4]

STAT3 activates SOCS1 [1-5]

S_22 1 S_23 1

cdc42 activates WASP independently. Upon TCR-APC engagement, Nck activates WASP only when Vav1 is active (through phosphorylation of SLP-76).<br/>

Mutual binding to Nck and Vav-1 brings together WASP with Cdc42-GTP [1,2,5].

WASP contains a proline-enriched segment through which it interacts with Nck [1,2,5].<br/>

WASP contains a cdc42/Rac interactive binding (CRIB) motif, which mediates WASP binding to the activated form of the cdc42 guanosine\r\n triphosphatase [1,3,4].<br/>

S_34 1 S_131 1 S_111 1

After FAK autophosphorylation of Tyr 397, Src mediated phosphorylation of FAK occurs at Tyrosines 576 and 577 [1].<br/>

After autophosphorylation on Y397 of FAK, Src binds via the SH2 domain and phosphorylates FAK on Tyrosine residues 576 and 577 [1-4].<br/>

FAK (Y397) for the Src SH2 domain, allowing Src to phosphorylate FAK [1-4].<br/>

S_158 1 S_145 1

cAMP positively regulates EPAC.<br/>

EPAC is a GEF directly activated by cAMP [1-3].<br/>

S_28 1

STAT1 activates IRF1. [1-3]

STAT1 activates IRF1. [1-3]

S_103 1

IRAK1 activates TRAF6 via binding and translocation.<br/>

IRAK1 transloactes TRAF6 and activates it [1-3].<br/>

S_161 1

PAK negatively regulates phosphorylation of MLC, while ROCK activates MLC via phosphorylation.<br/>

PAK decreases MLC phosphorylation to inhibit it [1-3].<br/>

ROCK phosphorylates MLC, activating it [4-6].<br/>

S_37 1

IL10R, IL21R, IL23R, IL27R, and IL6R induce activation of STAT3 &nbsp;[1-4]

IL21R induces STAT3 activation [1-4]

IL10R induces STAT3 activation [1-4]

IL27R&nbsp;induces STAT3 activation [1-4]

IL6R&nbsp;induces STAT3 activation [1-4]

IL23R&nbsp;induces STAT3 activation [1-4]

S_108 1 S_91 1 S_174 1 S_92 1 S_100 1

IL4R phosphorylates STAT6 [1-3]

IL4R phosphorylates STAT6 [1-3]

S_74 1

BCL10 and Malt1 form a heterodimer that is recuited by Carma1 to form a complex called CBM. [1-3] The CBM serves as an essential bridge for IKK to IKBa. [1-3]

Carma 1 recruits the heterodimer of BCL10 and Malt1 to create lipid rafts. [1-3]

S_153 1

Cas binds to Crk to form and active complex. Paxillin independently activates Crk via binding.<br/>

Cas binds to Crk to form and active Cas/Crk scaffold complex [1-3].

Phoshphorylated paxillin creates a binding site for Crk. Crk becomes active upon binding paxillin [4-6].<br/>

S_148 1 S_188 1

IL9_e stimulates the IL9R and JAK3 phosphorylates IL9R to activate [1-3]

IL-9 binds to the heterodimeric receptor ( IL-9 receptor ).[1-3]

<strong></strong><strong></strong>Upon IL-9 stimulation, the tyrosine kinases JAK3 and JAK1, associated\r\n with IL-9R, becomes &nbsp;activated and phosphorylate the IL-9R on a single tyrosine residue. [1-3]<br/>

S_1 1 S_142 1

JAK2, P38, and TYK2 phosphorylate STAT4 leading to activation. [2-5,7-10]. GATA3 inhibits STAT4 as an intermediate to block Interferon gamma signaling. [1,2,6]

JAK2 phosphorylates the tyrosine residues of STAT4 leading to activation. [2-5]

Tyk2 phosphorylates STAT4 [2-5]

GATA3 inhibits STAT4. This is thought as an intermediate to shut down interferon gamma signaling. [1,2,6]

P38 induces serine 721 phosphorylation of STAT4. [7-10]

S_64 1 S_36 1 S_89 1 S_117 1 S_89 1

Adenyl_cylcase creates cAMP from ATP. [1-3]

Adenyl_cylcase creates cAMP from ATP. [1-3]

S_77 1

RhoGEF is activated by ligand binding to the GPCR 12/13. RhoGEF is activated via binding of FAK.<br/>

G alpha 12/13 receptor binds to activates RhoGEF [1-4].<br/>

The FAT region of FAK binds to RhoGEF to activated it [5-7].<br/>

S_16 1 S_67 1

FYN can be independently activated by CAV1 via linkage, or independently activated by CD3 chains via phosphorylation, when TCR is stimulated.<br/><br/>

CAV1 links integrin subunits to the to the Tyrosine kinase FYN [2,6,7].<br/>

CD3-TCR complex mediates phosphorylation of FYN [3,5,6].<br/>

CD3-TCR Complex mediates the proximal phosphorylation of FYN [5]. Specifically, the gamma and epsilon chains of CD3 phosphorylate FYN when TCR is active [3,6].<br/>

S_185 1 S_63 1 S_73 1

RORGT is thought to regulate itself after activation [2]. STAT3 and TGFBR cooperate to activate RORGT [1-4]

STAT3 cooperates with TGFBR to activate RORGT. [1-4]

RORGT is thought to regulate itself after activation [2]

TGFBR cooperates with TGFBR to activate RORGT. [1-4]

S_33 1 S_22 1 S_79 1 S_79 1 S_22 1

Galpha I receptor, GEFs, rac1, and RhoGEFs activate cdc42 independently.<br/>

RhoGEFs increase binding of GTP-Cdc42, activating Cdc42 [4,5,7].<br/>

GEFs <span id="">bind to inactive Cdc42 (Cdc42-GDP) to form a Cdc42-GEF \r\nbinary that un-stabilizes the GDP binding; the abundant cytosolic GTP \r\nreplaces GDP in Cdc42 and form active Cdc42 (Cdc42-GTP) [1-3].<br/></span>

S_71 1 S_29 1

Rac1 binds to IRSp53, allowing effector function of the complex to be carried out.<br/>

Activated <span class="highlight" style="background-color:">Rac</span> binds to the amino terminus of <span class="highlight" style="background-color:">IRSp53 [1-3].<br/></span>

S_128 1

IL12RB1 activates Tyk2 if IL2RB2 is also active.<br/>

IL12RB mediates tyrosine phosphorylation of Tyk2 when IL12RB1 &amp; 2 are active [1-4].

IL12RB mediates tyrosine phosphorylation of Tyk2 when IL12RB1 & 2 are active [1-4].<br/>

S_151 1 S_11 1

RhoA activated Rock via binding.<br/>

The active GTP-bound form of RhoA binds to ROCK to activate it [1-3].<br/>

S_123 1

Galpha Q activates PLC beta via binding.<br/>

G alpha Q binds to carboxyl-terminal region between residue 881 and the most <span class="highlight" style="background-color:">carboxyl-terminal</span> 10 kDa of PLC-beta <span class="highlight" style="background-color:">1 and activates it [1-3].<br/></span>

S_166 1

STAT1,3,4, and 5 activate IL22 [1-3]

STAT1 and STAT3 cooperate to activate IL22 [1-3]<br/>

STAT5 activates IL22 [1-3]

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">STAT1 and STAT3 cooperate to activate IL22 [1-3]</span>

STAT4 activates IL22 [1-3]

S_103 1 S_27 1 S_22 1 S_125 1

The VCA regions of WASP and WAVE-2 independently activate Arp2/3.[1-5]<br/>

Upon Rac1-IRSp53 binding, the VCA region of WAVE2 is exposed and causes Arp2/3 complex activation [4].<br/>

Arp2/3 complex binds to WASp within the C subdomain at residue Met 474 and within the A subdomain to Trp 500 [2].<br/><br/>The conserved VCA domain of WASP proteins <span class="highlight" style="background-color:">activates</span> <span class="highlight" style="background-color:">Arp2/3</span> complex by inducing conformational changes and delivering the first <span class="highlight" style="background-color:">actin</span> monomer of the daughter filament [3].

S_7 1 S_15 1

Ras is activated independently by both RASgrp and SOS. <br/>

RasGTP binds to the allosteric pocket of Sos. This priming enhances <span class="highlight" style="background-color:">SOS</span> activity and creates a positive RasGTP-<span class="highlight" style="background-color:">SOS</span> feedback loop for <span class="highlight" style="background-color:">Ras</span> activity. Sos complexes to Ras to activate it [7].<br/>

<span style="font-size: 12px;">RasGRP orchestrates <span class="highlight" style="background-color:">Ras</span> signaling by activating <span class="highlight" style="background-color:">Ras</span> directly and by facilitating priming of <span class="highlight" style="background-color:">SOS</span> with RasGTP that binds the allosteric pocket [7].<br/><br/>TCR-induced production of DAG results in the activation of two major \r\npathways involving Ras and PKC. Ras is a guanine nucleotide-binding \r\nprotein and is required for the activation of the serine-threonine \r\nkinase Raf-1. [Smith]</span>

S_76 1 S_9 1

BRAF, RAF1,AND PAK independently activate MEK1/2 via phosphorylation.<br/>

PAK phosphorylates MEK1/2 on Serine 298 to activate it [4-6].<br/>

B-RAF phosphorylates MEK1/2 [7-9].<br/>

Raf-1 that leads to the activation of the mitogen-associated protein \r\nkinases (MAPKs) extracellular signal-regulated kinase 1 (Erk1) and Erk2.[1-3]

S_49 1 S_70 1 S_134 1

RIAM is activated by binding to activated Rap1.<br/>

<span class="highlight" style="background-color:">RIAM</span> contains a RA-like (Ras association) \r\ndomain, a PH (pleckstrin homology) domain, and various proline-rich \r\nmotifs.RIAM binds to the GTP-bound Rap1 and becomes activated [1-3].<br/>

S_187 1

cofilin, an actin binding protein, facilitates the dissociation of actin monomers from F-actin pointed ends [6-8].<br/>

Arp2/3 Nucleates Actin filaments [1-7].<br/>

Arp2/3 uses a monomer of G actin for the initial nucleation of actin, forming f-actin [1-7].<br/>

S_40 1 S_10 1

STAT5_high starts cell proliferation. [1]

Once a cell is proliferating, this node can self maintain to start clonal expansion of the cell. &nbsp;[1]

S_46 1 S_165 1

Ca2+ released in the cytosol from IP3 signaling disrupts the inhibitory effect of calmodulin which leads to the activation of Calcineurin. [1-4]

<div><span style="font-size: 10pt;">Ca2+ released in the cytosol from IP3 signaling disrupts the inhibitory effect of calmodulin which leads to the activation of Calcineurin. [1-4]</span></div>

S_65 1

RAF1 is is activated by binding of Ras.<br/>

Ras is a guanine nucleotide-binding protein and is required for the activation of the serine-threonine kinase Raf-1 [1-4].<br/>

S_41 1

PAK and ROCK activate LIMK via phosphorylation.<br/>

PAK phosphorylates LIMK on Threonine 508 [4-6].<br/>

ROCK phosphorylates LIMK on Threonine 508 [1-3].<br/>

S_37 1 S_70 1

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">A higher level of activity from STAT5 is needed to sufficiently inactivate IL4RA. [1,2]</span><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);"><br/></span></div><div><span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL4RA is presumed active until IL4 signaling promotes a higher activity that is denoted by the node IL4RA_HIGH. [1]</span></div>

A higher level of activity from STAT5 is needed to sufficiently inactivate IL4RA. [1,2]

S_165 1 S_165 1
S_30 1

CGC an IL4RA are subunits of the IL4R and their activity is required for IL4R to function. [1-3] IL4, whether internal or external, binds to the receptor. [1-3]

The higher activity of IL4RA is needed to promote a more reactive receptor. [1-3]

External source of Interleukin 4 that binds the highly reactive receptor state. [1-3]

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">Internal source of Interleukin 4 that binds the highly reactive receptor state. [1-3]</span>

The Common Gamma Chain is part of the IL4 receptor and its activity is required for IL4 signaling. [1-3]

S_178 1 S_175 1 S_168 1 S_6 1 S_175 1 S_168 1

Lck phosphorylates ITAMS<br/>

Lck phosphorylates CD3 ITAM \r\nmotifs and amplifys the signal through the co-receptor CD4 to which\r\n it is associated [1-5].<br/>

S_132 1

STAT3 is the main activator of IL21 production but requires NFAT and proliferation. [1-4]

STAT3 activates IL21 through IL6 signaling. [1-4]

Proliferation is required along with transcription factors STAT3 and NFAT for IL21 production. [1-4]

Transcription factor NFAT is required in cooperation with proliferation and STAT3 for IL21 production. [1-4]

S_75 1 S_22 1 S_46 1

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">Intleukin 18 binds to IL18R1 [1-3]</span>

IL18_e binds to IL18R1. [1-3]

S_162 1

STAT3 activates SOCS3 negative feedback loop.<br/>

Tyrosine phosphorylated STAT3 induces SOCS3 expression [1-3].<br/>

S_22 1

ZAP-70 phosphorylates LAT, which recruits Gads, phospholipase C?1 (PLC?1) and Grb2.

<span class="highlight" style="background-color:">Zap</span>-<span class="highlight" style="background-color:">70</span>&nbsp; <span class="highlight" style="background-color:">phosphorylates</span> <span class="highlight" style="background-color:">LAT</span> on <span class="highlight" style="background-color:">tyrosine</span> residues at positions 226, 191, 171, 132 and 127 [1-3].<br/>

S_101 1

TGFBR activates SMAD3. [1-3]

TGFBR activates SMAD3. [1-3]

S_79 1

CD3 becomes activated upon TCR stimulation.<br/>

CD3 and TCR is a complex. Upon the TCR portion becoming activated by APC and MHC II, CD3 chains are activated [1-3].<br/>

S_73 1

Dlgh1 activates mapk14 upon TCR stimulation.<br/>

S_114 1 S_121 1

<div style="font-family: Times; font-size: medium;"><font face="Arial, Verdana" style="font-family: Arial, Verdana; font-size: 10pt;">Upon IP3 receptor binding. Ca2+ stores in the Endoplasmic R</font><font face="Arial, Verdana" size="2">eticulum are&nbsp;released&nbsp;into the cytoplasm. [1-3]</font></div><div style="font-size: 10pt;"><font face="Arial, Verdana" size="2"><br/></font></div>

<div><font face="Arial, Verdana" size="2" style="font-family: Arial, Verdana; font-size: 10pt; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">Upon IP3 receptor binding. Ca2+ stores in the Endoplasmic R</font><font face="Arial, Verdana" size="2">eticulum are&nbsp;released&nbsp;into the cytoplasm. [1-3]</font></div><div style="font-family: Arial, Verdana; font-size: 10pt; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;"><font face="Arial, Verdana" size="2"><br/></font></div><div style="font-family: Arial, Verdana; font-size: 10pt; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;"><br/></div>

S_93 1

<font color="#484848" face="Verdana, sans-serif"><span style="font-size: 11.818181991577148px;">IL10 is activated by STAT3 or GATA3 in cooperation with NFAT and&nbsp;proliferation.&nbsp;</span></font>

STAT3 activates IL10 by binding to its promoter. [1,2,4]

Proliferation is required in cooperation with NFAT and GATA3 or STAT3 to produce IL10 [1-3]

Transcription factor NFAT is required in cooperation with proliferation and GATA3 or STAT3 to produce IL10. [1-3]

GATA3 activates IL10 through the remodeling of the IL10 locus. [1-3]

S_75 1 S_22 1 S_89 1 S_46 1

G alpha 12/13 ligand activates the 12/13 GPCR receptor.<br/>

The<font size="2"> G(alpha)<span class="highlight" style="background-color:">12</span>/<span class="highlight" style="background-color:">13</span> <span class="highlight" style="background-color:">G protein-coupled receptor is activated up specific ligand binding [1-3].<br/></span></font>

S_61 1

CAV1 activates NOS2A.<br/>

CAV1 activates NOS2A [1].<br/>

S_185 1

<br/><div><font face="Arial, Verdana" size="2"><br/></font></div><div><font face="Arial, Verdana" size="2">TGFB is believed to be important to block the activation of lymphocytes and phagocytes.&nbsp;</font></div>

This node indicates proliferation of the cell and works in conjunction with FOXP3 and NFAT in the production of TGFB. [1]

The transcription factor NFAT is believed to cooperate with FOXP3 and proliferation in the expression of TGFB. [1]

It is believed that FOXP3 has an effect in the role TGFB expression. [1]

S_181 1 S_46 1 S_75 1

PAK can be independently activated by rac1 and cdc42 via induced autophosphorylation or by recruitment by Nck.<br/>

Upon GTPase binding, PAK1 undergoes a conformational\r\n change that separates the autoinhibitory domain \r\nfrom the kinase domain. This induces kinase activity and \r\nautophosphorylation at several sites, including the Thr-423 site in the \r\nactivation loop\r\n to stabilize the active state [1-3,7,8].

Nck recruits PAK through its SH3 domain [4-6].<br/>

Upon GTPase binding, PAK1 undergoes a conformational\r\n change that separates the autoinhibitory domain \r\nfrom the kinase domain. This induces kinase activity and \r\nautophosphorylation at several sites, including the Thr-423 site in the \r\nactivation loop\r\n to stabilize the active state [1,7,8].

S_34 1 S_131 1 S_128 1

Crk binds to C3G and activates it.<br/>

Crk has an N-terminal SH3 domain that binds and interacts with the guanine nucleotide exchange factor CG3 [1-4].<br/>

S_25 1

TCR is activated by APC if CD28 provides a costimulation signal.<br/>

Any antigen presenting cell (Macrophage, Dendritic, and B cells) is able\r\n to display antigen to the T cell via it's MHC II. Antigen then triggers\r\n the TCR. For full activation of the TCR, there must be a secondary, \r\ncostimulatory signal, which is provided when B7 from the APC binds to \r\nCD28. The second signal allows the TCR to become fully activated [5-7].

Any antigen presenting cell (Macrophage, Dendritic, and B cells) is able to display antigen to the T cell via it's MHC II. Antigen then triggers the TCR. For full activation of the TCR, there must be a secondary, costimulatory signal, which is provided when B7 from the APC binds to CD28. The second signal allows the TCR to become fully activated [1-7].<br/>

S_140 1 S_156 1

IL4R requires the common gamma chain (CGC) and IL4 Alpha subchains to be active in order to bind Interleukin 4. [1] This activation is for the intermediate interleukin 4 response [1]

Interleukin 4 receptor alpha is a subchain of the interleukin 4 receptor. [1] Its activity is required to respond to interleukin 4.&nbsp;

External source of interleukin 4.

Interleukin 4 binds with IL 4 receptor when CGC and IL4A are in their active state. [1] The naming of this node denotes internally produced interleukin 4 from the model.

CGC is the common gamma chain and is required for numerous interleukin receptors. [1] IL4R requires the activity of CGC to bind IL4. [1]

S_6 1 S_51 1 S_168 1 S_178 1 S_51 1 S_168 1

Calcineurin cooperates with P38 to activate NFAT. CD28 and TCR, once engaged, signal to activate NFAT. GSK3-b inhibits NFAT activity. [1-6]

CD28 and TCR activate NFAT after engagement of these ligands. [1-3]

Calcineurin activates NFAT through dephosphorylation. [1]

CD28 and TCR activate NFAT after engagement of these ligands. [1-3]

P38 is coupled to the activation of NFAT in cooperation with DLGH1 and Calcineurin because of its phosphorylation at Tyr323. [5-6]

GSK3-b inhibits NFAT by phosphorylation. [3]

S_48 1 S_64 1 S_137 1 S_156 1 S_73 1 S_73 1 S_156 1

SOS is localized to the membrane by Grb2.

Sos is recruited to the membrane by adapter Grb2. The N-terminal SH3 \r\ndomain of Grb2 binds to the C-terminal proline rich region of SOS. Grb2 \r\nSH2 domain properly localizes the complex to the membrane by \r\nbinding to phosphorylated tyrosines on receptors or membrane-anchored \r\nadapters [1-6].

S_98 1

Adenyl cyclase is activated by GalphaS_r and inhibited by GalphaI_r

Galpha_iR has a negative impact on the activation of adenyl cyclase [1-3]

GalphaS_R is the stimulatory GPCR that activates adenyl cyclase to carry out cAMP signaling. [1-3]

S_129 1

Transforming growth factor beta binds with the receptor to activate the TGFB signal transduction pathway.&nbsp;

External&nbsp;source of Transforming growth factor beta binds with the receptor to activate the TGFB pathway. [1-3]

Internal source of Transforming growth factor beta binds with the receptor to activate the TGFB pathway. [1-3]

S_94 1 S_69 1

MKK7 activates TAK1 via phosphorylation.<br/>

TAK1 phosphorylates MKK7 to activate it [1-3].<br/>

S_149 1

IL2 requires STAT5 and STAT6 to be produced. It also requires that FOXP3 and TBET are in active. [1-6]

STAT5 and STAT6 cooperate to inhibit IL2. [1,5,6]

STAT5 and STAT6 cooperate to inhibit IL2. [1,5,6]

NFKB is an activator of IL2 in the absence of TBET. [1,2,6] If TBET is also active, NFKB cooperates with TBET to inhibit IL2. [1,2,6]

TBET cooperates with a subunit of NFKB to inhibit IL2. [1,2,6]

Production of IL2 requires NFAT which is blocked by FOXP3. [1,2,4,6]

FOXP3 inhibits IL2 production by blocking the activation of NFAT. [1,2,4,6]

S_95 1 S_125 1 S_23 1 S_115 1 S_95 1 S_75 1 S_181 1 S_125 1 S_23 1 S_115 1 S_95 1

ICOS is a co-stimulator on T helper cells that interacts with Antigen presenting cells. [1-3]

ICOS is a costimulator that is activated by an antigen presenting cell. [1-3]

S_140 1

GATA3 inhibits RUNX3, and TBET activates RUNX3 [1-5]

TBET activates RUNX3 to further IFNG signaling. [1,2,4]

GATA3 inhibits RUNX3. [3-5]

S_115 1 S_89 1

CD3 can activate GADD45G through an unclear mechanism. IL12 has an influence of expression on GADD45G. [1-4]

IL12 has an influence on expression for GADD45G. [1-4]

CD3 can activate GADD45G although the reaction is unclear. [1-4]

S_57 1 S_63 1

IL22_e binds to IL22R [1-3]

IL22 binds to IL22R. [1-3]

S_154 1

PIP3_345 is a product generated by PI3K.<br/>

PIP3_345 is a product of PI3K enzymatic synthesis upon PI3K activation [1-4].<br/>

S_110 1

cAMP activates the phosphorylase activity of PKA<br/>

activation of PKA is cAMP-dependent [1-3].<br/>

S_28 1

GATA3 is the transcription factor most associated with a Th2 lineage. It is activated by STAT6, self maintained through Dec2 activation and inhibited by Tbet. [1-7]

STAT6 induces the up-regulation of GATA3. [3,4,8]

Dec2 is first activated by GATA3 initially and Dec2 helps GATA3 to maintain itself in a Th2 determined lineage. [5-7]

TBET inhibits GATA3 by binding to GATA3 promoter sites. [6-9]

S_23 1 S_115 1 S_173 1

IL23 is activated by STAT3, but needs NFAT and proliferation. [1-3]

STAT3 activates IL23 in an IL6 mediated manner. [1-3]

Proliferation is needed to begin signaling. [1,2]

NFAT is required for IL23 signaling. [1,2]

S_75 1 S_22 1 S_46 1

IL27R requires the subchain of GP130 and IL27RA along with binding of interleukin 27. [1-3]

IL27RA is a subunit of IL27R and its activity is required for interleukin 27 signaling. [1-3]

Interleukin 27 binds to the interleukin 27 receptor to activate it. [1-3]

GP130 is a subchain and is required for interleukin 27 signaling. [1-3]

S_72 1 S_127 1 S_141 1

IL21 binds to IL21R and requires CGC and GP130 for interleukin 21 signaling. [1-4]

Internal source of interleukin 21 that binds to IL21R [1-4]

External source of interleukin 21 binds to IL21R [1-4]

Common gamma chain that is required in cooperation with IL21R for interleukin 21 signaling. [1-3]

Subchain that is required in cooperation with IL21R for interleukin 21 signaling. [1-3]

S_130 1 S_168 1 S_72 1 S_56 1 S_168 1 S_72 1

PLCg is responsible for the production of the second messenger IP3[1-3]

PLCg is responsible for the production of the second messenger IP3[1-3]<br/>

S_112 1

NFKB is active until inactivated in this model. FOXP3 and IKB can inactivate NFKB [1-4]

<font face="Verdana, Geneva, sans-serif"><span style="font-size: 11px;">IKB suppresses NFKB by binding to inactivate [1-4]</span></font>

FOXP3 suppresses NFKB signaling. [2-4]

S_119 1 S_181 1 S_119 1 S_181 1

DAG is a product of PLCg via enzymatic conversion<br/>

PLCb hydrolyzes PIP2 to IP3 and diacylglycerol (<strong>DAG</strong>) [5-7].<br/>

<span class="highlight" style="background-color:">PLC gamma</span><span class="highlight" style="background-color:"></span> <span class="highlight" style="background-color:">hydrolyzes</span> <span class="highlight" style="background-color:">phosphatidylinositol 4,5-bisphosphate</span> into <span class="highlight" style="background-color:">diacylglycerol (DAG) [1-4].<br/></span>

S_38 1 S_112 1

IFNGR requires both sub units, IFNGR1 and IFNGR2 to be activated as well as receiving a response from IFNG or IFNG_e [1-3].

IFNG_e is the external source of IFNG. IFNG is produced from active T helper 1 cells. [1] IFNG_e activates IFNGR as long as the subchains IFNGR1 and IFNGR2 are active. [1-3]<div><br/></div>

IFNG activates IFNGR upon binding as long as IFNGR1 and IFNGR2 are active. [1-3]

IFNGR1 is a subchain of the IFNGR. [1-3]

IFNGR2 is a subchain of the IFNGR. [1-3]

S_133 1 S_54 1 S_118 1 S_136 1 S_54 1 S_118 1

Phosphorylation of <span class="highlight" style="background-color:">Shc</span> on <span class="highlight" style="background-color:">tyrosine</span> residue Y317 allows binding to the SH2 domain of <span class="highlight" style="background-color:">Grb2 [7-9]<br/></span>

ZAP70 phosphorylates Tyr residue in LAT, which then recruits Gads, Grb2, and PLC gamma [1-3].<br/>

S_107 1 S_60 1

CD26 binds CAV1 and phosphorylates it.<br/>

CD26 mediates phosphorylation of CAV1 [1-3].<br/>

S_185 1

GP130 and IL12RB1 come together to help bind IL23. [1-3] RORGT and STAT3 are thought to be needed for the sub units. [1,2]

STAT3 and RORGT cooperate to activate IL23R. [1,2] It is thought that they are needed for the sub units. [1,2]

External source of interleukin 23 that binds the receptor. [1-3]

RORGT and STAT3 cooperate to activate IL23R. [1,2] It is thought that they are needed for the sub units. [1,2]

Internal source of Interleukin 23 that binds the receptor. [1-3]

IL12RB1 is a subchain that interacts with GP130 to start IL 23 signaling. [1-3]

GP130 is a subchain required for IL23R activity. [1-3]

S_32 1 S_22 1 S_33 1 S_151 1 S_72 1 S_90 1 S_22 1 S_33 1 S_151 1 S_72 1

ZAP-70 binds to the CD3 domain and is phosphorylated by ITAMS.<br/>

Phosphorylated ITAMs become docking sites for the tandem SH2 domains of ZAP-70, leading to phosphorylation [1-3].<br/>

ZAP-70 has an SH2 domain that interacts with the epsilon CD3 chain and zeta TCR chain [4-6].<br/>

S_55 1 S_63 1

The IL2R requires CGC and IL2RB sub chains for normal affinity responses. [1] The addition of IL2RA activation creates a high affinity response of the receptor. [1]

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL2RA is a sub chain of IL2R. Its activity is not required for a normal IL2 response. Upon activation if IL2RA, the high affinity response becomes active. [1]</span>

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL2 is produced by the model in normal IL2 response. IL2R uses IL2 in the event that IL2_E is absent. [1]</span>

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL2RB is a subchain of IL2R. Its activity is required for proper activation if IL2R. [1]</span>

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL2_e is required for IL2R to become active. IL2_e is an external source of Interleukin-2 and binds IL2R when the appropriate sub-chains are active. [1]</span>

<font face="Arial, Verdana" style="color: rgb(79, 79, 79); line-height: 14.390625px; text-align: justify; background-color: rgb(255, 255, 255);">CGC is a sub-chain of IL2R. Its activity is required to properly activate IL2R. [1] &nbsp;CGC is known to be a common chain for Interluekins 2, 4, 7, 9, 15, and 21</font><font color="#2e2e2e" face="Arial Unicode MS, Arial Unicode, Arial, URW Gothic L, Helvetica, Tahoma, sans-serif" style="line-height: 14.390625px; text-align: justify; background-color: rgb(255, 255, 255);"><span style="line-height: 20px; word-spacing: -1px;">. [3]</span></font>

S_81 1 S_180 1 S_168 1 S_8 1 S_135 1 S_180 1 S_168 1 S_8 1

STAT1 is activated by IFNBR, IFNGR, and IL27R and suppressed by SOCS1 [1-8]

Interleukin 27 receptor induces STAT1 activation in T cells. [4-6]

Interferon beta receptor induces STAT1 activation in T cells. [4-6]

Interferon gamma receptor induces STAT1 activation in T cells. [4-6]

SOCS1 suppresses STAT1 signaling in T Cells. [1,7,8]

S_97 1 S_14 1 S_91 1 S_14 1 S_164 1 S_14 1

GATA3 activates IRF4.<br/>

GATA3 strongly binds to IRF4 [1-3].<br/>

S_89 1

GAB2 and IL2RB independently activate SHP-2.<br/>

SHP-2 undergoes tyrosine phosphorylation through the IL-2 receptor beta chain [1,5,6].<br/>

GAB2, the major SHP2 binding protein, becomes tyrosyl-phosphorylated and associates with SHP2 [2-4].<br/>

S_124 1 S_180 1

Shc1 is phosphorylated and activated by FYN.<br/>

Fyn binds, via its SH3 domain, to Shc. Shc is subsequently phosphorylated at tyrosine 317 [2-6].<br/>

Shc is phosphorylated by the Tyrosine residue 338 by the IL-2 beta chain receptor [1,5,7].<br/>

IL2R phosphorylates SHC1 [1,5,7]

S_31 1 S_180 1 S_102 1

The IL10 receptor requires subchains IL10 receptor alpha and IL10 receptor beta in order to bind Interleukin 10. [1]

IL10RA is a subchain of IL10R. [1]

Internal source of Interleukin 10. Binds with IL10R in the presence of IL10RA and IL10RB. [1]

External source of Interleukin 10. Binds with IL10R in the presence of IL10RA and IL10RB. [1]

IL10RB is a subchain of IL10R. [1]

S_66 1 S_183 1 S_85 1 S_109 1 S_183 1 S_85 1

FAK, GAB2, IL2R, and SHP2 independently activate PI3K. CD28 and ICOS activates PI3K when both are active.<br/>

CD28 activatesPI3K [1-4].<br/>

SHP2 mediates PI3K activation [12-14].<br/>

ICOS recruits the p50alpha subunit of PI3K and activates it [1-4].<br/>

FAK binds to PI3K and moderately activates it [5-7].<br/>

IL-2 activates PI3K [11,18,19].<br/>

Phosphorylated GAB2 binds PI3K and activates it [8-10].<br/>

Ras GTPase activates PI3K [15-17].<br/>

S_41 1 S_105 1 S_16 1 S_102 1 S_156 1 S_82 1 S_124 1

SLP-76 activates Vav via Tyrosine phosphorylation.<br/>

TCR signaling through Lck and ZAP-70 leads to the phosphorylation of SLP-76 at tyrosines 112, 128, and 145, creating binding\r\n sites for Vav-1 [1-4].<br/>

S_176 1

ITK, LAT, and ZAP-70 independently activate PLCg.<br/>

Phophorylated Tyrosine residues of LAT, specifically Y171 and Y132, are necessary for the association and activation of PLCg [1,2,6].<br/>

Phosphorylation of <span class="highlight" style="background-color:">PLC</span>-gamma1 by <span class="highlight" style="background-color:">Itk</span> requires a direct, phosphotyrosine-independent interaction between the Src homology 2 (SH2) domain of <span class="highlight" style="background-color:">PLC</span>-gamma1 and the kinase domain of <span class="highlight" style="background-color:">Itk [4,8,9].<br/></span>

Phosphorylation of ZAP-70 on Tyrosine319 activates PLC gamma by association of the SH2 domain of ZAP-70 [3,7,8].<br/>

S_170 1 S_101 1 S_60 1

IL22R,IL2R,IL9R, and JAK3 activate JAK1. [1,2,3,6,7]. SOCS3 inhibits JAK1.[3-5]

IL-9 receptor ligation results in auto and/or trans-phosphorylation of Janus\r\nkinases 1 and 3 ( JAK1 and JAK3 ). [1-3]&nbsp;<br/>

<span id="species:viewSpeciesDescription" style="font-size: 12px;">Upon SOCS3 phosphorylation, JAK1 is polyubiquinated in a phosphorylation-dependent manner [3-5].<br/></span>

IL-22 binding to IL-22 receptor complex leads to the\r\nactivation of the receptor-associated Janus kinases JAK1. [1-3]<br/>

IL2R binds to JAK1 [1,6,7]

JAK3 phosphorylates JAK1 [1,6,7]

S_86 1 S_59 1 S_1 1 S_59 1 S_26 1 S_59 1 S_102 1 S_59 1

MEKK4 activates MEK6 via phosphorylation.<br/>

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">MEKK4 binds to a docking site on MEK6 and phosphorylates it [1-3].<br/></span>

S_120 1

TBET is also known as T-box 21. It is the transcription factor responsible for CD4+ T helper 1 differentiation.[1][2][3] TBET is activated by STAT1 [3] [4], is self maintained [2] [3] [4], and inhibited by GATA3 [2] [3] [4].&nbsp;

TBET is described as an auto activator that is dependent upon IFNG and STAT1. [4] In the absence of IFNG and STAT1, TBET levels were reduced, but maintained activation. [4]

CD4+ T helper cells lacking STAT1 were unable to sufficiently activate TBET. [4] STAT1 is vital to initial TBET activation, but not required for subsequent activity. [4]

TBET mRNA is downregulated by virus induced GATA3 expression in vivo in the murine model. [1]<br/>

S_115 1 S_89 1 S_103 1 S_89 1

Activated Mek1/2 phosphorylates and activates Erk. [1-4]<br/>

Raf-1 that leads to the activation of the mitogen-associated protein \r\nkinases (MAPKs) extracellular signal-regulated kinase 1 (Erk1) and Erk2.[1-4]<br/><br/>MEK1/2-mediates phosphorylation of ERK1/2 on the\r\n Thr-Xaa-Tyr signature motif (Thr202 and Tyr204) [1-4].<br/>

S_43 1

IL12RB1 and IL12RB2 come together to bind JAK2. [1-3] SOCS3 inhibits JAK2 by binding the STAT4 docking site of JAK2[5-7]

SOCS3 inhibits JAK2 by binding to the STAT4 docking site on JAK2. [5-7]

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">IL12RB2 (as part of IL12R) binds with JAK2 to activate. [1-3]</span>

IL12RB1 (as part of IL12R) binds with JAK2 to activate. [1-3]

S_151 1 S_11 1

IKK complex degrades IKB which allows NFKB to translocate to the nucleus. [1-3]

Upon T cell activation, IKB is phosphorylated by the IKB kinase (IKK) complex, ubiquitinylated, and degraded, allowing NFKB to translocate into the nucleus, where it actives genes involved in the function, survival, and homeostasis of T cell. [1-3]

S_177 1 S_177 1

Activation of MEKK4 by GADD45B is dependent on GADD45G.<br/>

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); "><br/><br/></span><span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">GADD45 beta physically interacts with MEKK4 and increases its activity if GADD45G is also bound to MEKK4 [1-4].</span><br/>

<br style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; "/><span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">GADD45 beta physically interacts with MEKK4 and increases its activity if GADD45G is also bound to MEKK4 [1-4].<br/></span>

S_152 1 S_84 1

MEK3 is activated by MEKK4 via phosphorylation.<br/>

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">MEK3 has a conserved docking site and can be activated by MEKK4 by phosphorylation [1-3].<br/></span>

S_120 1

Carma 1 and BCL10_Malt1 associate together to form lipid rafts and help link IKK to IKBa. [1-3]

Bcl10_Malt1 are recruited to Carma1 to form a complex that builds a lipid raft and links IKK to IKBa. [1-4]

Carma 1 recruits and associates with Bcl10_Malt1 to create the CMB complex that builds a lipid raft and links IKK to IKBa. [2][3]

S_24 1 S_153 1

RhoGEF and CAV1 independently activated RhoA.<br/>

CAV1 Y14 activates RhoA [4-6].<br/>

RhoGEF promotes formation of the active GTP-bound RhoA [1-3].<br/>

S_29 1 S_185 1

Grb2 activates GAB2 through binding and SHC1 activates through SHP2. [1-3]

SHC1 activates Gab2 through SHP2. [1-3]

Grb2 activates GAB2 through binding. [1-3]

S_107 1 S_98 1

IL15R, IL2R, IL4R, JAK1, LCK, and SYK all activate STAT5[1-5]

SYK&nbsp;&nbsp;phosphorylates STAT5[3-5]

Lck phosphorylates STAT5[3-5]

IL15R activates STAT5. [1-3]

IL2R&nbsp;&nbsp;activates STAT5. [1-3]

JAK1 autophosphorylates STAT5. [3-5]

IL4R&nbsp;&nbsp;activates STAT5. [1-3]

S_74 1 S_169 1 S_186 1 S_102 1 S_132 1 S_113 1

Crk translocates rac1 by a paxillin-Crk complex. NOS2A, Vav, and was independently activate rac1.<br/>

Vav catalyzes the nucleotide exchange of rac1, thereby activating it [3].<br/>

<span class="highlight" style="background-color:">paxillin-Crk-DOCK180</span> <span class="highlight" style="background-color:">signaling</span> <span class="highlight" style="background-color:">complex</span> controls rac1 activation [4-6].<br/>

Y221 site in CrkII <span class="highlight" style="background-color:">regulates</span> <span class="highlight" style="background-color:">Rac</span> <span class="highlight" style="background-color:">membrane</span> translocation [4-6].<br/>

NOS2A activates rac1 [2].<br/>

was binds, via the GTPase binding domain, to rac1 and activates it [2,7,8].<br/>

S_25 1 S_188 1 S_171 1 S_68 1 S_111 1
S_12 1

TCR signaling through Lck and ZAP-70 leads to the phosphorylation of SLP-76 at tyrosines 112, 128, and 145, creating binding\r\n sites for Nck [1].<br/>

Nck is recruited to Tyrosine phosphorylation sites on SLP-76 [1-3].<br/>

S_176 1

Upon peptide binding, Lck associates with cytoplasmic domains of co-receptors (CD4 &amp; CD28) that associate with TCR, becoming active. JAK3 phosphorylates Lck if Lck is bound to the activated IL2RB receptor.<br/><br/><br/>

CD28 activates autophosphorylation of Lck [6-7].<br/>

IL2RB binds Lck, which is subsequently phosphorylated by JAK3 [8-10].<br/>

<font face="Arial" size="2">Lck associates </font><font face="Arial" size="2">through its distinctive ammo-terminal segment with the cytoplasmic tails of T-cell co-receptor CD4, and is activated by autophosphorylation at Tyr394 [1-5].<br/></font>

IL2RB binds Lck, which is subsequently phosphorylated by JAK3 [8-10].

S_167 1 S_1 1 S_180 1 S_156 1

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

S_2 1 S_27 1 S_181 1 S_22 1 S_83 1 S_46 1 S_115 1 S_75 1 S_181 1 S_22 1 S_184 1 S_181 1 S_22 1 S_27 1 S_46 1 S_75 1 S_181 1 S_22 1 S_5 1 S_181 1 S_22 1

RAP1 activates BRAF through binding. [1-3]

RAP1 activates BRAF through binding. [1-3]

S_187 1

AKT inhibits GSK3-B by phosphorylation. [1-5]

AKT inhibits GSK3-B by phosphorylation. [1-5]

S_150 1 S_150 1

Cofilin is phosphorylated to it's inactive form by LIMK,<br/>

LIMK phosphorylates cofilin on Ser3 [1-4].<br/>

S_50 1 S_50 1

RIAM activates profilin by binding.<br/>

RIAM has a RA-like (Ras association) domain, a PH (pleckstrin homology) domain, and various proline-rich motifs. RIAM is able to bind and activated profilin [1-3].<br/>

S_44 1

Src is independently activated by Integrins and FAK Y397.<br/>

Src associates with the cytoplasmic domain of activated beta intergins and is subsequently activated [7-9].<br/>

FAK phosphorylated on Tyrosine residue 397 mediates binding of Src via the SH2 domain [2,4,5].<br/>

S_158 1 S_4 1

PDK1 is activated by PIP3_345 by recruitment.<br/>

PIP3_345 recruits PDK1 to the plasma membrane and serves a docking site [1-3].<br/>

S_87 1

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">TRAF6 associates with NIK to activated the Nf-Kb cascade.<br/></span>

TRAF6 associates with NIK via the conserved WKI motif within the TRAF domain [1-3].<br/>

S_20 1

Cas is (dependently) phosphorylated by FAK upon integrin clustering.<br/>

Cas is tyrosine phosphorylated by FAK upon beta integrin engagement [1-4].<br/>

FAK has two proline rich sequences (PR1 and PR2) located between the FAT and catalytic domains that interact with the SH3 domain of Cas [1]. FAK tyrosine phosphorylates Cas [2-4].<br/>

S_16 1 S_4 1

TRAF6 activates TAK1 by ubiquination<br/>

TRAF6 is a ubiquitin ligase that activates kinase activity of TAK1 by binding and ubiquitination [1-3].<br/>

S_20 1

PDK1 phosphorylates AKT.[1-4]<br/>

<span style="font-size: 12px;">Localized PIP</span><font size="2">3</font><span style="font-size: 12px;">&nbsp;generation serves as a docking site for the PH\r\n domains of PDK1 and its\r\n target Akt. [1-3]</span>

S_146 1

IL12RB1 binds to IL12_e and is put into a higher level by IRF1 for Interleukin 12 signaling. [1-6]

IRF1 promotes a higher level of activation of IL12RB1. [4-6]

IL12_e is the external source of Interleukin 12 that is binds to IL12RB1. [1-3]

S_18 1 S_57 1

IL12_e has an influence on the expression of GADD45B and TCR can activate it through CD3. [1-4]

IL12_e has an influence on expression of GADD45B. [1-4]

TCR can activate GADD45B through CD3. [1-4]

S_57 1 S_73 1

Carma1 binds with the dimeric tale of CD26 in the cytosol and is activated by phosphorylation from PKC. [1-3]

The dimeric tail of CD26 in the cytosol binds with Carma1 to activate. [1-3]

Carma1 is phosphorylated and activated by PKC. [1-3]

S_159 1 S_99 1

CD28 provides co-stimulatory signals to the TCR which is required for activation of T helper cells. [1]<div><br/></div>

CD28 becomes activated up B7 ligand binding [1-6].<br/>

CD28 detects an antigen presenting cell and provides co-stimulatory assistance to the T cell receptor in the presence of an antigen presenting cell. [1] [2]

S_42 1 S_140 1

STAT4 induces transcription of the ERM gene. [1,2]

STAT4 induces transcription of the ERM gene. [1,2]

S_27 1

Autophosphorylation of FAK occurs at Tyrosine residue 397 upon integrin stimulation<br/>

FAK activation and phosphorylation is dependent on integrins binding to extra cellular ligands. FAK colocalizes with integrins in focal contacts and is autophosphorylated on Tyrosine residue 397 [1-7].<br/>

S_4 1

DAG binds to PKC to activate it.<br/>

PKC contains two cysteine-rich, zinc finger–like motifs, that are binding sites of DAG. When DAG binds, PKC becomes active.<br/>

S_96 1

STAT3, RORGT, NFAT, NFKB and proliferation all cooperate to produce IL17. [1-5] STAT1, STAT5, STAT6, can bind its promoter and inhibit IL17. [1,2]

STAT6 inhibits IL17 by the binding of its promoter. [1-3]

STAT5 inhibits IL17 by the binding of its promoter. [1-3]

* Add any laboratory findings here. You can use bullet points to separate different findings. <br>* Additional findings.

Proliferation is required for the production of IL17 in the thought that the cell is in clonal expansion. [2]

NFKB cooperates with STAT3 and RORGT through transcriptional regulation to promote IL 17 production. [1-5]

STAT1 inhibits IL17 by the binding of its promoter. [1-3]

RORGT has an influence on expression of IL17 and cooperates with STAT3 through transcriptional regulation of IL17. [1-5]

NFAT activity is required for the production of IL17 [2]

FOXP3 blocks transcription of interleukin 17 by binding to its promoter. [1-3]

S_75 1 S_22 1 S_46 1 S_95 1 S_33 1 S_23 1 S_181 1 S_125 1 S_181 1 S_103 1 S_181 1

<span style="font-family: Verdana, Geneva, sans-serif; font-size: 10.909090995788574px; background-color: rgb(255, 255, 255); ">IL-18R1 physically interacts with IRAK1 and increases its activity</span>

Interleukin\r\n18 receptor 1 ( IL-18R1 ), activated by IL-18, recruits Interleukin-1\r\nreceptor-associated kinase 1 ( IRAK1 ) and TNF receptor-associated factor 6 (\r\nTRAF6 ). TRAF6 activates Mitogen-activated protein kinase kinase kinase 14\r\n( NIK(MAP3K14) ). This leads to subsequent activation of NF-kB, which\r\npromotes transcription of GADD45 beta [1-4].<strong><br/></strong>

S_58 1

MEKK4 activates MEK4 via phosphorylation.<br/>

MEKK4 phosphorylates MEK4 [1-3].<br/>

S_120 1

IFNBR is activated in the presence of IFNB[1-3]

IFNB ligand for the IFNB receptor [1-3]

S_47 1

This node represents a higher activity level of STAT5 needed for proliferation. IL2R_HIGH and IL4R_HIGH activate STAT5_HIGH to promote proliferation. [1-3]

IL2R_HIGH activates STAT5_HIGH. [1-3]

IL4R_HIGH activates STAT5_HIGH [1-3]

S_13 1 S_53 1

G(alpha)Q is activated by receptor-mediated activation induced by ligand [1-3].<br/>

S_106 1

CD4 binds to the constant region of MHC class II to stabilize the interaction with TCR [3,4].<br/>CD4 binds MHC at the superdimer interface [2].<br/>

CD4 associates the with TCR-CD3 complex upon antigen binding [1,4-6].

CD4 associates the with TCR-CD3 complex upon antigen binding [1,4-6].<br/>

S_73 1 S_3 1 S_63 1

SYK is activated by associating with the IL2 receptor chain.<br/>

SYK associates and is activated by IL2R [1-3].<br/>

S_102 1

SLP-76 recruits Itk<br/>

SLP-76 with phosphorylated N-terminal Tyrosines recruit Itk (via Itk's SH2 domain) [1-4].<br/>

S_176 1

Src activates was via binding.<br/>

Src binds to was to activate it [1,2].<br/>

S_145 1

Rac1 activates JNK dependent on Crk. MEK4 and MKK7 activate JNK independently.<br/>

Two MAPKKs, MKK4 and MKK7, have been identified as JNK activators. \r\nGenetic studies demonstrate that MKK4 and MKK7 serve nonredundant \r\nfunctions as activators of JNK in vivo. [1,5-9]<br/>

The SH3 domain of Crk is required for JNK activation by rac1 [2-4].

MEK4 acts on JNK to activate it [1,5-9].<br/>

The SH3 domain of Crk is required for JNK activation by rac1 [2-4].<br/>

S_128 1 S_25 1 S_163 1 S_80 1

Gata3 induces the transcription factor Bhlhe41 that encodes for Dec2. [1-3]

GATA3 induces the gene Bhlhe41 that encodes for Dec2. [1-3]

S_89 1

IL6R requires subchains IL6RA and GP130 to bind IL6 [1].<div><br/></div>

External source of Interleukin 6. Binds with IL6R when GP130 and IL6RA are active. [1]

IL6RA is a subchain of the interleukin 6 receptor. [1]

Glycoprotein 130 forms a complex with binded receptors of the IL6 family. [1] Its activity is required for IL6R to respond to interleukin 6. [1]

S_72 1 S_78 1 S_139 1

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">A higher level of activity from STAT5 is needed to sufficiently activate IL4RA_high. [1,2]</span>

<span style="color: rgb(79, 79, 79); font-family: Arial, sans-serif; font-size: 12px; line-height: 18px; orphans: 3; widows: 3; background-color: rgb(255, 255, 255);">A higher level of activity from STAT5 is needed to sufficiently activate IL4RA_High. [1,2]</span>

S_165 1

SLP-76 is activated by Gads (via binding) or by ZAP-70 (via phosphorylation).<br/>

LAT-associated Gads bring adapter protein SLP-76 (LCP-2) to rafts, where it becomes a substrate for ZAP70. [1-4]<br/><br/>

Upon TCR stimulation, ZAP-70 phosphorylates 3 N-terminal Tyrosines of SLP-76 [6].<br/>

S_179 1 S_101 1

The BCL10,Carma1,Malt1 complex links IKK to IKBa and NIK phosphorylates the IKK complex. [1-6]

Upon association of BCL10, Carma1, and Malt1, they form lipid rafts that help link IKK to IKBa thus creating the IKK complex. [1-3]

NIK phosphorylates the IKK complex. [4-6]

S_122 1 S_73 1 S_147 1

Gads it activated upon association with LAT<br/>

Phosphorylated LAT recruits Gads [1-3].<br/>

S_60 1

FOXP3 is activated by NFAT,STAT5,SMAD3,FOXP3 and inhibited by STAT1, STAT3, and RORGT. [1-9]

STAT3 cooperates with RORGT to inhibit FOXP3. [6]<div><br/></div><div>This interaction is in question. Source 6 defines this interaction happening while source 7 indicates their may be a direct interaction that actually activates FOXP3.</div>

SMAD3 cooperates with NFAT to promote the enhancer of FOXP3. [2,7,9]

STAT5 induces FOXP3 expression through the binding to the FOXP3 gene. [1,6,8]

RORGT cooperates with STAT3 to inhibit FOXP3 [6].<div><br/></div><div>This interaction is in question. Source 6 defines this interaction happening while source 7 indicates their may be a direct interaction that actually activates FOXP3.</div>

STAT1 inhibits FOXP3 by binding to its promoter. [3,6,9]

NFAT is a transcription factor that cooperates with SMAD3 to induce expression of FOXP3. [1,2,5]

FOXP3 can regulate itself through epigenetic modifications to the Treg-specific demethylated region of the FOXP3 locus [1,4].

S_75 1 S_125 1 S_181 1 S_62 1 S_125 1 S_75 1 S_22 1 S_33 1 S_103 1

STAT6 and TCR can activate GFI1. [1-4]

STAT6 activates GFI1 through IL 4 signaling. [1-4]

Once the TCR is engaged, it activates GFI1. [1-4]

S_23 1 S_73 1

ATF2 is phosphorylated and activated by P38 (Mapk14). [1-3]&nbsp;

P38 (mapk14) phosphorylates and activates ATF2. [1-3] P38 phosphorylates at Thr-69 and Thr-71. [3]

S_64 1

CAV1 is independently activated by integrins. Src independently activates CAV1 via phosphorylation.<br/>

External node used to control expression of CAV1.<br/>

Src phosphorylates CAV1 on Tyrosine 14 [4-6].<br/>

CAV1 is activated by integrin clustering [1-3].<br/>

S_145 1 S_155 1 S_4 1

IL15R requires the subchains IL15RA, CGC and IL2RB to bind to interleukin 15. [1-3]

IL2RB is a required subchain to bind IL15. [1-3]

IL15_e binds to IL15R in the presence of CGC, IL15RA, and IL2RB. [1-3]

IL15RA is a required subchain to bind IL15. [1-3]

CGC is a required subchain in order to bind IL15. [1-3]

S_168 1 S_180 1 S_19 1 S_126 1

PKA independently activates Rap1. EPAC, a guanine-nucleotide exchange factor, independently activates Rap1. GEFs activate Rap1 when Crk is active.<br/>

EPAC exchanges a GDP for a GTP to activate Rap1 [4-6].<br/>

Crk phosphorylates C3G, leading to the activation of Rap1 [1-3].<br/>

PKA binds Rap1 and activates it [7-9].<br/>

C3G GEF activates rap1 in a Crk dependent manner [1-3].<br/>

S_17 1 S_71 1 S_25 1 S_88 1

FAK activates paxillin via phosphorylation.<br/>

The FAK-Src complex mediates phosphorylation of paxillin on tyrosines 31 and 118 [1-3].<br/>

S_16 1